| W | Theme | Ch. | Mon | Tue | Practical | Exercises | FYS2160 |
|---|---|---|---|---|---|---|---|
| 34 |
Introduction. Order from disorder. |
1,2 |
Lect 1 |
- |
Your turn 1A, Prob 1.3, 2.2, 2.5 |
Models, Ideal gas |
|
| 35 |
What's inside cells Statistical mechanics, diffusion, random walks, Brownian motion |
2,3 | Lect 2a |
Lab |
Brownian motion exp., image analysis
|
Random walks and Browninan motion |
Microstates macrostates, counting states (multiplicity) |
| 36 |
Active and passive motion |
4 | Lab | E coli exp | Project: Active Passive walkers | Multiplicity of different models | |
| 37 | Diffusion and low Reynolds world | 4,5 | Lect 4 |
Papers |
Project: Active Passive walkers | Entropy, 2nd law, gas expansion, mixing, chemical potential, diffusion | |
| 38 | Entropy, temperature, free energy | 6 | Lect 6a |
Lect 6b Quizz solving |
Your turn 6A-H | ||
| 39 | Entropic forces | 7 |
Quizz solving cont.
|
Your turn 6I Problems 6.6, 6.7 |
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| 40 | Lecture break | - | - | - | - | ||
| 41 | Chemical forces & self assembly | 7,8 |
Gibbs factor, chemical potential, chemical reactions. |
Lect 10 Hemoglobin model, CO poisoning. Depletion pressure, osmosis flux, charges, |
O2016 Ex 0.8 and 0.10 | ||
| 42 | Molecular machines, Mechanobiology | 10 |
Lect 11 Physics of adherent cells Mechanotransduction |
Lect 12 Thomas: Ultrasound-biophysics mechanisms |
Exp. Ultrasound | ||
| 43 | Mechanobiology |
Edna: "Single molecule talin stretching", quantitative imaging |
Thomas: Analysis of US exp. | Analysis of US exp. | |||
| 44 | Morphogenesis |
Lect. 14 Stefan: Cells to tissues: Morphogenesis Lect. 14 Mathias: Organ-on-a-chip technology |
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| 45 | Cellular Potts Model |
|
Lect 16 Alvaro: Lecture notes CPM |
Alvaro: CPM Simulation project |
Simulation exercise | Project: CPM | |
| 46 | Ions at membranes, membrane potentials to action potential |
11.1-2 12.1-2 |
Lect 17: Nernst potentials, Donnan equilibrium, ion pumping |
Lect 18: Action potential -> cable equation |
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| 47 | Simulating nerve impulses | 12.3 |
Lect 19, Geir: Simulating the Hodgkin-Huxley model. Lecture notes |
Geir: Simulation project | Project: Nerve impulses | ||
| 48 | Calcium imaging nerve impulses | 12.4 |
Lect 20, Kristian: Lect. and demo in lab: Two-photon Ca2+ imaging |
Prerequisites from thermodynamics and statistical physics: See Fys2160 2020, lecture notes and videos of the following lectures: 2, 4, 6 (not first video), 7-10.